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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4086895_4088470_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4086895 - 4088470
Intron Length:
1576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TTTCTTTTAAAA
Flanking Amino Acid:
TLESCRDPQHGKAHLFEVLD
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
72
39.5
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
75.6
0.58
1
79.3
31.7
Minor 5ss
33.3
-1.9
2.9
41.4
44.7
Minor BPS
69.4
0.6
1.3
77.65
32.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013971
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014546
4033291 - 4088604
55314