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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4141426_4144819_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4141426 - 4144819
Intron Length:
3394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATTACA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTATTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
CLSYSRAAAKLQIWDTAGQE
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
78.6
29.8
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
81.6
0.71
0.9
82
34.8
Minor 5ss
30.6
-2.2
2.5
35
40.8
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
RAB43
Ensembl Gene ID:
ENSAPLG00000026304
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035526
4140903 - 4146399
5497