Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4172192_4172318_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4172192 - 4172318

Intron Length:

127

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGATTT

5'SS Class:

strong_major

3'SS Sequence:

TTCCCTTTAACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTAAT

U12 Branch Point Sequence:

TTCCCTTTAACA

Flanking Amino Acid:

ISKKVAQIQNAGLGEFRIRD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

83.3

29.1

Major BPS

81.8

0.79

1.1

34.5

Major PPT

79.9

0.67

0.8

76.4

30.7

Minor 5ss

-0.6

3.2

62.3

43.4

Minor BPS

77.6

0.86

1.1

80.59

35.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014136

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023673

4165374 - 4175928

10555

ENSAPLT00000014747

4165374 - 4176024

10651