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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4174715_4175619_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4174715 - 4175619
Intron Length:
905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATCATTT
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAGAA
U12 Branch Point Sequence:
TAGAAGTAAATT
Flanking Amino Acid:
ELTGVWQRGVRTALARFRQA
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.2
74.2
37.1
Major BPS
62.2
0.3
1
59
38
Major PPT
100
1.12
0.4
100
0
Minor 5ss
69.3
0.65
2.3
82.5
37.1
Minor BPS
41.3
-0.5
2.3
58.55
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014136
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023673
4165374 - 4175928
10555