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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4175929_4176021_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4175929 - 4176021
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCGCG
5'SS Class:
major
3'SS Sequence:
TTCTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
CCTCACTCACCT
Flanking Amino Acid:
MARNAEKAMTA
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
58.5
40.7
Major BPS
64.9
0.37
1
67
29.8
Major PPT
90
0.9
0.6
88.4
21.2
Minor 5ss
31.4
-2.1
3.2
35.7
42.1
Minor BPS
45.5
-0.2
2
62.51
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014136
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014747
4165374 - 4176024
10651