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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4178777_4179260_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4178777 - 4179260
Intron Length:
484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CATCTTTTGATT
Flanking Amino Acid:
QKDCTKVKCYRCGETGHVAI
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
89.6
0.89
0.7
85
29.8
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
57.4
0.31
1.2
68.1
37.3

Associated Gene:

Gene:
CNBP
Ensembl Gene ID:
ENSAPLG00000014227
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014831
4178151 - 4180137
1987