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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4179460_4179647_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4179460 - 4179647
Intron Length:
188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTTATTGTGGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTG
Flanking Amino Acid:
LAKDCDLQEDACYNCGRGGH
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
87
27.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
60.7
0.24
1.2
63.3
42
Minor 5ss
40.4
-1.1
2.8
51.7
39.2
Minor BPS
68.9
0.45
1.6
74.56
38.3

Associated Gene:

Gene:
CNBP
Ensembl Gene ID:
ENSAPLG00000014227
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014831
4178151 - 4180137
1987