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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4179741_4180017_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4179741 - 4180017
Intron Length:
277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CCATTTCAAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TCTCCTGTTACC
Flanking Amino Acid:
RGRGMRSRGRGFQFMSSSLP
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
66.7
0.38
1
63
37.1
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
47.2
-0.2
2.3
63.67
42.2

Associated Gene:

Gene:
CNBP
Ensembl Gene ID:
ENSAPLG00000014227
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014831
4178151 - 4180137
1987