About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4188497_4189354_R

Intron Information:

Intron Rank:
129697
Intron Class:
major
Intron Phase:
Intron Coordinates:
4188497 - 4189354
Intron Length:
858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
GCTTTATGAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
75.5
0.63
1
66
40.9
Major PPT
84.7
0.78
0.7
80.9
31.3
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
50.3
0.01
1.7
61.75
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016951
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047070
4188069 - 4205843
17775