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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4189397_4205410_R

Intron Information:

Intron Rank:
129698
Intron Class:
major
Intron Phase:
Intron Coordinates:
4189397 - 4205410
Intron Length:
16014

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TATCTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTTCAGTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
79.6
35.4
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
88.9
0.88
0.7
83.7
30.9
Minor 5ss
32.1
-2
2.8
39.3
41.2
Minor BPS
64.3
0.44
2.2
84.69
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016951
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047070
4188069 - 4205843
17775