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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4228084_4259637_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4228084 - 4259637
Intron Length:
31554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TGTCTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TGTCTTTCCACA
Flanking Amino Acid:
MTCRRRCNDVLHRFVIG
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
81.2
0.7
0.8
76.1
32.5
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
46.7
-0.2
1.9
61.23
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014376
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015068
4228062 - 4295829
67768