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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4259694_4269847_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4259694 - 4269847
Intron Length:
10154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAAATC
5'SS Class:
major
3'SS Sequence:
TGTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTCCCTCACT
Flanking Amino Acid:
GLRSRKGELKTASMEHIQGA
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
74
34.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
43.5
-0.7
3
60.5
44.2
Minor BPS
68.8
0.67
2.1
92.91
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014376
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041205
4259638 - 4296863
37226
ENSAPLT00000026011
4259638 - 4296851
37214
ENSAPLT00000020603
4218083 - 4295829
77747
ENSAPLT00000015068
4228062 - 4295829
67768
ENSAPLT00000046390
4259638 - 4296863
37226