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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4271070_4272138_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4271070 - 4272138
Intron Length:
1069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
ATCTCCTAAATA
Flanking Amino Acid:
AVFRLVSEPKGKKVRLDWNT
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
73.3
36.4
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
93.6
0.98
0.6
92.3
18
Minor 5ss
34.6
-1.8
3.5
42.5
44.6
Minor BPS
66.7
0.52
1.6
73.28
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014376
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015068
4228062 - 4295829
67768
ENSAPLT00000041205
4259638 - 4296863
37226
ENSAPLT00000027276
4218729 - 4295829
77101
ENSAPLT00000026011
4259638 - 4296851
37214
ENSAPLT00000020603
4218083 - 4295829
77747
ENSAPLT00000046390
4259638 - 4296863
37226