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Intron Name: Anas_platyrhynchos_platyrhynchos_13_4272242_4273199_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4272242 - 4273199

Intron Length:

958

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TTGTGTTTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATTAAT

U12 Branch Point Sequence:

CTTGCATTAATC

Flanking Amino Acid:

DHVPLTTHNFARKTFLKLAF

Intron Amino Acid Position:

171

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

85.6

30.4

Major BPS

79.4

0.73

0.9

79.6

29.1

Major PPT

80.7

0.69

0.9

73.5

41.9

Minor 5ss

44.2

-0.6

2.9

66.4

38.5

Minor BPS

0.35

1.7

71.1

40.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014376

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026011

4259638 - 4296851

37214

ENSAPLT00000020603

4218083 - 4295829

77747

ENSAPLT00000046390

4259638 - 4296863

37226

ENSAPLT00000015068

4228062 - 4295829

67768

ENSAPLT00000041205

4259638 - 4296863

37226

ENSAPLT00000027276

4218729 - 4295829

77101