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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4274424_4275855_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4274424 - 4275855
Intron Length:
1432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCTAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
ATAACCATAACC
Flanking Amino Acid:
MRESVSRIPVSSQHRYSTPH
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
38.1
Major BPS
61.3
0.28
1
62
30.6
Major PPT
87.2
0.84
0.7
80.4
31.6
Minor 5ss
43.2
-0.7
2.9
55
49.2
Minor BPS
63
0.39
1.7
72.2
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014376
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020603
4218083 - 4295829
77747
ENSAPLT00000015068
4228062 - 4295829
67768
ENSAPLT00000046390
4259638 - 4296863
37226
ENSAPLT00000041205
4259638 - 4296863
37226
ENSAPLT00000027276
4218729 - 4295829
77101