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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4276010_4279396_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4276010 - 4279396
Intron Length:
3387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATACTG
5'SS Class:
major
3'SS Sequence:
TTCTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TACTTACTAACT
Flanking Amino Acid:
TMPVDSRIIEDAIRSHSESA
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.3
42.6
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
92.7
0.96
0.6
91.8
19.2
Minor 5ss
35.6
-1.6
3.2
48
47.5
Minor BPS
53.4
0.18
1.9
74.86
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014376
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027276
4218729 - 4295829
77101
ENSAPLT00000015068
4228062 - 4295829
67768
ENSAPLT00000046390
4259638 - 4296863
37226