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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4277574_4279396_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4277574 - 4279396
Intron Length:
1823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAGGTATT
5'SS Class:
major
3'SS Sequence:
TTCTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TACTTACTAACT
Flanking Amino Acid:
WCRRFCLRGRDAIRSHSESA
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
75.5
40.6
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
92.7
0.96
0.6
91.8
19.2
Minor 5ss
41.5
-0.9
3.2
56
42.5
Minor BPS
53.4
0.18
1.9
74.86
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014376
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041205
4259638 - 4296863
37226
ENSAPLT00000026011
4259638 - 4296851
37214
ENSAPLT00000020603
4218083 - 4295829
77747