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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4279646_4280208_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4279646 - 4280208
Intron Length:
563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
ACTTTTGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
AAATAATTAACT
Flanking Amino Acid:
GSNTQEKNKIRPRGQRDSSY
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
81.8
31
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
81.5
0.71
0.9
73.1
41.5
Minor 5ss
40
-1.1
2.9
57.3
41.2
Minor BPS
59.4
0.37
1.8
75.63
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014376
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027276
4218729 - 4295829
77101
ENSAPLT00000026011
4259638 - 4296851
37214
ENSAPLT00000020603
4218083 - 4295829
77747
ENSAPLT00000046390
4259638 - 4296863
37226
ENSAPLT00000015068
4228062 - 4295829
67768
ENSAPLT00000041205
4259638 - 4296863
37226