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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4285667_4286720_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4285667 - 4286720
Intron Length:
1054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
AAGATACTAATT
Flanking Amino Acid:
QAFRNEVAVLRKTRHVNILL
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
77.1
0.61
0.8
78
29.3
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
44.3
-0.3
1.8
58.12
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014376
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020603
4218083 - 4295829
77747
ENSAPLT00000046390
4259638 - 4296863
37226
ENSAPLT00000015068
4228062 - 4295829
67768
ENSAPLT00000041205
4259638 - 4296863
37226
ENSAPLT00000027276
4218729 - 4295829
77101
ENSAPLT00000026011
4259638 - 4296851
37214