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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4289772_4292829_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4289772 - 4292829
Intron Length:
3058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCAAA
5'SS Class:
major
3'SS Sequence:
TCTCCTTCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATGCTTTTAATT
Flanking Amino Acid:
EQPTGSILWMAPEVIRMQDS
Intron Amino Acid Position:
542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
0.9
72
34.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
73.9
0.54
1
75.1
27.4
Minor 5ss
33.4
-1.9
2.8
36.4
42
Minor BPS
66.1
0.58
1.2
74.92
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014376
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027276
4218729 - 4295829
77101
ENSAPLT00000026011
4259638 - 4296851
37214
ENSAPLT00000020603
4218083 - 4295829
77747
ENSAPLT00000046390
4259638 - 4296863
37226
ENSAPLT00000015068
4228062 - 4295829
67768
ENSAPLT00000041205
4259638 - 4296863
37226