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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4294694_4295688_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4294694 - 4295688
Intron Length:
995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
GCATTTCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTCTTTTCATT
Flanking Amino Acid:
VREERPLFPQILSSIELLQH
Intron Amino Acid Position:
631

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
88.1
25.2
Major BPS
100
1.24
0.5
100
0
Major PPT
72.7
0.51
0.9
69.7
36.5
Minor 5ss
40.3
-1.1
3.4
58.5
40.4
Minor BPS
53.6
0.19
1.7
71.97
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014376
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027276
4218729 - 4295829
77101
ENSAPLT00000026011
4259638 - 4296851
37214
ENSAPLT00000020603
4218083 - 4295829
77747
ENSAPLT00000046390
4259638 - 4296863
37226
ENSAPLT00000015068
4228062 - 4295829
67768
ENSAPLT00000041205
4259638 - 4296863
37226