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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4309953_4310113_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4309953 - 4310113
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCGC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACAAAAT
U12 Branch Point Sequence:
GGTTCCTGAGCG
Flanking Amino Acid:
MSTKQVTCRYYLQGVCRE
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
63.1
43.4
Major BPS
49.7
-0
1.1
55.6
36
Major PPT
75.3
0.57
0.8
68.9
31.7
Minor 5ss
32.8
-2
3
41.9
44.9
Minor BPS
55.5
0.04
1.8
62.56
44.5

Associated Gene:

Gene:
MKRN2
Ensembl Gene ID:
ENSAPLG00000014833
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015478
4298651 - 4310139
11489