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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4317814_4318281_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4317814 - 4318281
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTCCATAATA
Flanking Amino Acid:
PECLKRIKVQELIVTRWVSS
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.5
1.05
0.7
92.2
16.5
Major BPS
100
1.24
0.5
100
0
Major PPT
94.3
1
0.6
93.4
22.5
Minor 5ss
32
-2.1
2.8
41.5
45.1
Minor BPS
74.1
0.75
1.5
83.05
30.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014992
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015660
4317651 - 4325172
7522