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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4319077_4319727_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4319077 - 4319727
Intron Length:
651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGAAGC
5'SS Class:
major
3'SS Sequence:
CTTTGTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGAAT
U12 Branch Point Sequence:
TTTCTGTGAATT
Flanking Amino Acid:
YRKGPPFYHASYSVIAELVD
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.2
63.7
40.7
Major BPS
59.4
0.24
1.5
69.7
44.2
Major PPT
88.1
0.86
0.8
80.3
37.3
Minor 5ss
36.3
-1.6
2.7
44.5
43
Minor BPS
51.6
0.13
2.1
77.82
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014992
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015660
4317651 - 4325172
7522