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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4321289_4321961_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4321289 - 4321961
Intron Length:
673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
GCTTGATTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTTTGCTTGATT
Flanking Amino Acid:
LGCLTIYYGEEPLTILKLWE
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
26.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
75.9
0.58
1
65.7
44.5
Minor 5ss
32.1
-2
3.5
46.6
48.7
Minor BPS
66.3
0.59
1.8
82.57
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014992
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015660
4317651 - 4325172
7522