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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4322666_4322781_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4322666 - 4322781
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGGCTA
5'SS Class:
major
3'SS Sequence:
ATTTTTATTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTTAGTAATA
Flanking Amino Acid:
ESDSAHEQENLVKKEKLVCR
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
71.7
39.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.1
0.75
0.8
78.9
33.6
Minor 5ss
36.8
-1.5
3.5
52
44.9
Minor BPS
49.4
-0
2.2
68.66
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014992
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015660
4317651 - 4325172
7522