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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4351716_4361811_R

Intron Information:

Intron Rank:
153355
Intron Class:
major
Intron Phase:
Intron Coordinates:
4351716 - 4361811
Intron Length:
10096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGCAGC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGCAA
U12 Branch Point Sequence:
TTGCTTGCAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
66
40.1
Major BPS
53.5
0.09
1.4
67
39.8
Major PPT
89.6
0.89
0.6
84.8
30
Minor 5ss
36
-1.6
2.9
43.3
38.2
Minor BPS
40.9
-0.6
2.2
60.42
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029982
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024479
4335257 - 4361849
26593