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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4375565_4383660_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4375565 - 4383660
Intron Length:
8096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCATCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TACACTATAACT
Flanking Amino Acid:
KCLAVGMSHNAIRFGRMPQA
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
84.9
26.2
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
86.1
0.81
0.8
84.3
30.3
Minor 5ss
34
-1.8
2.8
39.2
40.5
Minor BPS
59.3
0.37
1.7
74.92
41.5

Associated Gene:

Gene:
PPARG
Ensembl Gene ID:
ENSAPLG00000009031
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009444
4363615 - 4387726
24112