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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4385728_4387506_R

Intron Information:

Intron Rank:
1
Intron Class:
minor-like
Intron Phase:
1
Intron Coordinates:
4385728 - 4387506
Intron Length:
1779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGCTTT
5'SS Class:
weak_minor
3'SS Sequence:
CCTTTATATGCAG|G
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TATCATTTAAAT
Flanking Amino Acid:
KYDIKLQDCQSAIKMEPPSP
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
74.2
37
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
78.7
0.65
0.9
73.6
34.9
Minor 5ss
76.5
0.89
2
81.9
31.2
Minor BPS
60.8
0.42
1.6
77.42
38.1

Associated Gene:

Gene:
PPARG
Ensembl Gene ID:
ENSAPLG00000009031
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009444
4363615 - 4387726
24112