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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4455875_4459623_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4455875 - 4459623
Intron Length:
3749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGTTTAC
5'SS Class:
major
3'SS Sequence:
GTACTGAACCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TTGTACTGAACC
Flanking Amino Acid:
KIPPQRPPPQGGPVQPQGMQ
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64
0.33
1.3
63.3
37.8
Major BPS
75.5
0.63
1
66
40.9
Major PPT
53.4
0.08
1
44.4
41.3
Minor 5ss
35.5
-1.6
2.9
44.2
43.6
Minor BPS
66.4
0.49
1.7
76.66
39

Associated Gene:

Gene:
SYN2
Ensembl Gene ID:
ENSAPLG00000009144
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036431
4452486 - 4627333
174848
ENSAPLT00000022586
4452834 - 4627333
174500
ENSAPLT00000009576
4452834 - 4583611
130778
ENSAPLT00000044644
4452834 - 4627333
174500