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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4459685_4474155_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4459685 - 4474155
Intron Length:
14471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAAC
5'SS Class:
strong_major
3'SS Sequence:
ATATATTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTGTTTTCAAAT
Flanking Amino Acid:
QRPTATQQPQSGSLKEPEPN
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
75.1
35.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
79.1
0.66
0.9
70.1
44.7
Minor 5ss
32.4
-2
3.2
42.3
44.8
Minor BPS
52.3
0.15
1.7
68.48
42.8

Associated Gene:

Gene:
SYN2
Ensembl Gene ID:
ENSAPLG00000009144
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022586
4452834 - 4627333
174500
ENSAPLT00000009576
4452834 - 4583611
130778
ENSAPLT00000044644
4452834 - 4627333
174500
ENSAPLT00000036431
4452486 - 4627333
174848