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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4474306_4486477_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4474306 - 4486477
Intron Length:
12172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTATTTTACA
Flanking Amino Acid:
GKDGKDYIFEVMDCAMPLIG
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
92.7
0.96
0.7
87.8
29.3
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
65.1
0.47
1.8
80.31
35

Associated Gene:

Gene:
SYN2
Ensembl Gene ID:
ENSAPLG00000009144
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022586
4452834 - 4627333
174500
ENSAPLT00000009576
4452834 - 4583611
130778
ENSAPLT00000044644
4452834 - 4627333
174500
ENSAPLT00000036431
4452486 - 4627333
174848