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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4486581_4490664_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4486581 - 4490664
Intron Length:
4084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTTTTGTAAAAC
Flanking Amino Acid:
AMLEQIAMSDKYKLWVDTCS
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
74.4
36
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
71.5
0.48
1.1
67.6
41.7
Minor 5ss
36.2
-1.6
2.9
43
37.7
Minor BPS
48.8
-0.1
2.4
70.75
40.8

Associated Gene:

Gene:
SYN2
Ensembl Gene ID:
ENSAPLG00000009144
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044644
4452834 - 4627333
174500
ENSAPLT00000036431
4452486 - 4627333
174848
ENSAPLT00000022586
4452834 - 4627333
174500
ENSAPLT00000009576
4452834 - 4583611
130778