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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4490740_4495763_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4490740 - 4495763
Intron Length:
5024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGCCAA
5'SS Class:
major
3'SS Sequence:
TCCCCATTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
GTTTTTGTAATA
Flanking Amino Acid:
QKIGSNYKAYMRTSISGNWK
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
63.2
38.7
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
79.7
0.67
0.8
76.5
30.9
Minor 5ss
34.2
-1.8
3.1
42.9
44.4
Minor BPS
56.6
0.2
2
70.9
36

Associated Gene:

Gene:
SYN2
Ensembl Gene ID:
ENSAPLG00000009144
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022586
4452834 - 4627333
174500
ENSAPLT00000009576
4452834 - 4583611
130778
ENSAPLT00000044644
4452834 - 4627333
174500
ENSAPLT00000036431
4452486 - 4627333
174848