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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4495907_4542084_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4495907 - 4542084
Intron Length:
46178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTGCA
5'SS Class:
major
3'SS Sequence:
ATGATGACTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TGCTGTTTATTT
Flanking Amino Acid:
QTFYPNHKEMIKVDNHYDFQ
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
67.9
37.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
64.3
0.32
1.1
55.3
44
Minor 5ss
32
-2.1
3.3
38.4
41.8
Minor BPS
49
0.01
2
67.71
44.1

Associated Gene:

Gene:
SYN2
Ensembl Gene ID:
ENSAPLG00000009144
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044644
4452834 - 4627333
174500