Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4529730_4534451_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4529730 - 4534451

Intron Length:

4722

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACATGGA

5'SS Class:

major

3'SS Sequence:

TGATAATTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

TTTTCCATTACT

Flanking Amino Acid:

K*SGMKSNK*RCLKDLKSSR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.6

0.6

1.1

65.9

40.1

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

74.8

0.56

70.5

44.2

Minor 5ss

30.3

-2.3

3.4

40.9

45.3

Minor BPS

71.3

0.75

1.9

93.77

33.6

Associated Gene:

Gene:

TIMP4

Ensembl Gene ID:

ENSAPLG00000027938

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047781

4511974 - 4537800

25827

ENSAPLT00000019131

4511923 - 4537800

25878