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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4535351_4535504_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4535351 - 4535504
Intron Length:
154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCACATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATATACTGAATT
Flanking Amino Acid:
IRDIKWAVAVKLLPATWCPA
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
71.1
0.48
0.9
68.5
37.2
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
62
0.45
1.6
77.77
38

Associated Gene:

Gene:
TIMP4
Ensembl Gene ID:
ENSAPLG00000027938
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047781
4511974 - 4537800
25827
ENSAPLT00000019131
4511923 - 4537800
25878