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Intron Name: Anas_platyrhynchos_platyrhynchos_13_4542175_4558442_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4542175 - 4558442

Intron Length:

16268

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGTCTT

5'SS Class:

strong_major

3'SS Sequence:

CCTTGTTTTACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTAAGAT

U12 Branch Point Sequence:

TCTCTCCTAAGA

Flanking Amino Acid:

IYNFCDKPWVFAQLVSVYKS

Intron Amino Acid Position:

104

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

83.5

Major BPS

55.1

0.13

1.2

52.7

41.6

Major PPT

0.79

0.8

78.9

33.1

Minor 5ss

40.3

-1.1

3.1

56.2

42.2

Minor BPS

49.5

-0

64.87

41.6

Associated Gene:

Gene:

SYN2

Ensembl Gene ID:

ENSAPLG00000009144

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044644

4452834 - 4627333

174500

ENSAPLT00000036431

4452486 - 4627333

174848

ENSAPLT00000009576

4452834 - 4583611

130778