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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4558600_4561288_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4558600 - 4561288
Intron Length:
2689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTATTATCAATT
Flanking Amino Acid:
QVFRNGTKVVRSFRPDFVLV
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78.2
0.64
0.9
73.8
36.8
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
57.6
0.32
1.8
78.15
38

Associated Gene:

Gene:
SYN2
Ensembl Gene ID:
ENSAPLG00000009144
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036431
4452486 - 4627333
174848
ENSAPLT00000022586
4452834 - 4627333
174500
ENSAPLT00000009576
4452834 - 4583611
130778
ENSAPLT00000044644
4452834 - 4627333
174500