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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4563260_4626959_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4563260 - 4626959
Intron Length:
63700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTGCC
5'SS Class:
major
3'SS Sequence:
TTCTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
ATATCCTTGATT
Flanking Amino Acid:
LLVIDEPHTDWAKAFRGKKV
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
69.5
36.3
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
92.3
0.95
0.6
88.3
21.5
Minor 5ss
32.7
-2
3.4
40.9
40.8
Minor BPS
78.8
0.99
1
86.22
33.2

Associated Gene:

Gene:
SYN2
Ensembl Gene ID:
ENSAPLG00000009144
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044644
4452834 - 4627333
174500
ENSAPLT00000036431
4452486 - 4627333
174848
ENSAPLT00000022586
4452834 - 4627333
174500