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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4632541_4632719_R

Intron Information:

Intron Rank:
131766
Intron Class:
major
Intron Phase:
Intron Coordinates:
4632541 - 4632719
Intron Length:
179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCATTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
82.1
0.72
0.7
74.2
30.9
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
60.5
0.41
2
82.44
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018101
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025591
4632165 - 4655701
23537