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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4686727_4687843_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4686727 - 4687843
Intron Length:
1117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGCG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTATCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTCTCTGTATCC
Flanking Amino Acid:
QAGPSAGHSENNMLDFVFAV
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
40.2
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
75.4
0.57
0.9
69
36.1
Minor 5ss
31.2
-2.1
3.2
38.5
46.7
Minor BPS
50.5
-0
2.2
69.42
42.8

Associated Gene:

Gene:
TAMM41
Ensembl Gene ID:
ENSAPLG00000009828
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041956
4686454 - 4700748
14295
ENSAPLT00000036052
4686454 - 4710214
23761
ENSAPLT00000010241
4686454 - 4710214
23761