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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4688024_4690251_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4688024 - 4690251
Intron Length:
2228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TGTTCAAAAACA
Flanking Amino Acid:
YNTLVPCNGRMIKYGVISTD
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
81.8
38.5
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
95.2
1.02
0.5
89
28.1
Minor 5ss
38.9
-1.2
2.8
43.3
43.8
Minor BPS
49.2
-0
2.2
70.69
40.9

Associated Gene:

Gene:
TAMM41
Ensembl Gene ID:
ENSAPLG00000009828
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041956
4686454 - 4700748
14295
ENSAPLT00000036052
4686454 - 4710214
23761
ENSAPLT00000010241
4686454 - 4710214
23761