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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4690345_4695550_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4690345 - 4695550
Intron Length:
5206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAACTATT
5'SS Class:
major
3'SS Sequence:
CTGATTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTACTCTGATTT
Flanking Amino Acid:
LYVAGRLQKPVKILTQNENG
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.2
82.1
37.7
Major BPS
79
0.72
1
69
38.9
Major PPT
82.8
0.74
0.9
80.4
37
Minor 5ss
47.7
-0.2
2.7
69.8
40.5
Minor BPS
50.6
0.1
1.7
70.98
39.9

Associated Gene:

Gene:
TAMM41
Ensembl Gene ID:
ENSAPLG00000009828
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036052
4686454 - 4710214
23761
ENSAPLT00000010241
4686454 - 4710214
23761
ENSAPLT00000041956
4686454 - 4700748
14295