About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4702250_4706693_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4702250 - 4706693
Intron Length:
4444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTACTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAA
U12 Branch Point Sequence:
CAACCATTAACT
Flanking Amino Acid:
VQSAKTILTADVTHHPEGCF
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
64.7
0.37
1
73
31.5
Major PPT
80.3
0.68
0.8
73.9
34.9
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
61.3
0.43
1.7
73.36
42.5

Associated Gene:

Gene:
TAMM41
Ensembl Gene ID:
ENSAPLG00000009828
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036052
4686454 - 4710214
23761