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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4702250_4710105_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4702250 - 4710105
Intron Length:
7856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTCTGGTAATT
Flanking Amino Acid:
VQSAKTILTAGAKKSVTYSV
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
91.4
0.93
0.6
85.5
29.2
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
47.3
-0.1
2.5
76.4
40.9

Associated Gene:

Gene:
TAMM41
Ensembl Gene ID:
ENSAPLG00000009828
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010241
4686454 - 4710214
23761