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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4712422_4731088_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4712422 - 4731088
Intron Length:
18667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGACT
5'SS Class:
strong_major
3'SS Sequence:
CCGAATTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
CCTTTCCGAATT
Flanking Amino Acid:
MRIQRGMETPL
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
78
36.1
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
71
0.47
1
60.9
44.3
Minor 5ss
35
-1.7
3.2
50
45.9
Minor BPS
49.8
0.06
1.8
68.67
42.7

Associated Gene:

Gene:
VGLL4
Ensembl Gene ID:
ENSAPLG00000010053
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028860
4712417 - 4810872
98456