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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4768276_4788958_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4768276 - 4788958
Intron Length:
20683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAATTTTT
5'SS Class:
major
3'SS Sequence:
CTTCTTCCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCATCCTCACTT
Flanking Amino Acid:
VERITQLAGKREAALRGEPR
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.3
80.7
34.7
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
81.9
0.72
0.7
77.6
24.4
Minor 5ss
47.6
-0.2
2.8
66.6
37.8
Minor BPS
55.6
0.26
1.9
72.84
44.3

Associated Gene:

Gene:
VGLL4
Ensembl Gene ID:
ENSAPLG00000010053
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031325
4767989 - 4810872
42884