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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4789149_4805267_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4789149 - 4805267
Intron Length:
16119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
TTTCATGTATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTCTCTTTCATG
Flanking Amino Acid:
SKMSRMFNPHLNKTANGDYR
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
73
36.6
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
75.3
0.57
1
74.2
39.9
Minor 5ss
40.2
-1.1
3.4
62.5
42.2
Minor BPS
59.8
0.16
1.8
66.31
42.6

Associated Gene:

Gene:
VGLL4
Ensembl Gene ID:
ENSAPLG00000010053
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010473
4731089 - 4813150
82062
ENSAPLT00000038349
4767493 - 4813150
45658
ENSAPLT00000031325
4767989 - 4810872
42884
ENSAPLT00000028860
4712417 - 4810872
98456
ENSAPLT00000026185
4723605 - 4810872
87268