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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4805494_4808696_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4805494 - 4808696
Intron Length:
3203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCACGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATAAT
U12 Branch Point Sequence:
TCTTCTTCCACG
Flanking Amino Acid:
PTLTSVERQQNRPSVITCAS
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
71.4
37.4
Major BPS
70.1
0.5
1.3
72.3
40.4
Major PPT
67.5
0.39
0.9
67.4
33.8
Minor 5ss
30.8
-2.2
3.8
47.7
48
Minor BPS
51.2
-0.1
2.1
62.98
45.3

Associated Gene:

Gene:
VGLL4
Ensembl Gene ID:
ENSAPLG00000010053
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010473
4731089 - 4813150
82062
ENSAPLT00000038349
4767493 - 4813150
45658
ENSAPLT00000031325
4767989 - 4810872
42884
ENSAPLT00000028860
4712417 - 4810872
98456
ENSAPLT00000026185
4723605 - 4810872
87268